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CN 34-1054/N

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A novel missense mutation in QRICH2 causes male infertility due to multiple morphological abnormalities of the sperm flagella

Cite this:
CSTR: 32290.14.JUSTC-2024-0064
https://doi.org/10.52396/JUSTC-2024-0064
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  • Author Bio:

    Yousaf Raza is currently pursuing a master’s degree in the Division of Life Sciences and Medicine, University of Science and Technology of China, under the supervision of Prof. Qinghua Shi. His research mainly focuses on male infertility

    Wasim Shah is currently engaged as a postdoctoral researcher in the Molecular and Cell Genetics Laboratory of the University of Science and Technology of China. He received his Ph.D degree in Genetics from the University of Science and Technology of China in 2021. His research mainly focuses on the genetic mechanism of male infertility

    Qinghua Shi is a Principal Investigator and Professor in Genetics and Cell Biology at Hefei National Research Center for Physical Sciences at the Microscale, and the Division of Life Sciences and Medicine, University of Science and Technology of China. His research interests include molecular regulation of gametogenesis in humans and mammals, identification of mutations causing human infertility, molecular bases and mechanisms of meiosis, and the generation and fates of aneuploid cells

  • Corresponding author: E-mail: shah86@ustc.edu.cn; E-mail: qshi@ustc.edu.cn
  • Received Date: 29 April 2024
  • Accepted Date: 14 June 2024
  • Multiple morphological abnormalities of the sperm flagella (MMAF) are characterized by bent, irregular, short, coiled, and absent flagella. MMAF is caused by a variety of genes, some of which have been identified. However, the underlying genetic factors responsible for the majority of MMAF cases are still largely unknown. The glutamine-rich 2 (QRICH2) gene plays an essential role in the development of sperm flagella by regulating the expression of essential sperm flagellar biogenesis-associated proteins, and genetic variants of QRICH2 have been identified as the primary cause of MMAF in humans and mice. Here, we recruited a Pakistani consanguineous family to identify the genetic variant causing infertility in patients with MMAF. Whole-exome sequencing and Sanger sequencing were conducted to identify potentially pathogenic variants causing MMAF in infertile patients. Hematoxylin and eosin (HE) staining was performed to analyze sperm morphology. Quantitative polymerase chain reaction, western blot, and immunofluorescence staining analyses were conducted to observe the expression of QRICH2 in spermatozoa. A novel homozygous missense variant (c.4618C>T) in QRICH2 was identified in the affected patients. Morphological analysis of spermatozoa revealed the MMAF phenotype in infertile patients. qPCR revealed a significant reduction in the level of sperm QRICH2 mRNA, and immunofluorescence staining revealed a lack of sperm QRICH2 expression. Additionally, patients harboring a homozygous QRICH2 mutation presented reduced expression of outer dense fiber 2 (ODF2) in sperm, whereas sperm expression of A-kinase anchor protein 4 (AKAP4) was normal. These findings expand our understanding of the genetic causes of MMAF-associated male infertility and emphasize the importance of genetic counseling.
    Loss-of-function mutation in QRICH2 causes MMAF and male infertility.
    Multiple morphological abnormalities of the sperm flagella (MMAF) are characterized by bent, irregular, short, coiled, and absent flagella. MMAF is caused by a variety of genes, some of which have been identified. However, the underlying genetic factors responsible for the majority of MMAF cases are still largely unknown. The glutamine-rich 2 (QRICH2) gene plays an essential role in the development of sperm flagella by regulating the expression of essential sperm flagellar biogenesis-associated proteins, and genetic variants of QRICH2 have been identified as the primary cause of MMAF in humans and mice. Here, we recruited a Pakistani consanguineous family to identify the genetic variant causing infertility in patients with MMAF. Whole-exome sequencing and Sanger sequencing were conducted to identify potentially pathogenic variants causing MMAF in infertile patients. Hematoxylin and eosin (HE) staining was performed to analyze sperm morphology. Quantitative polymerase chain reaction, western blot, and immunofluorescence staining analyses were conducted to observe the expression of QRICH2 in spermatozoa. A novel homozygous missense variant (c.4618C>T) in QRICH2 was identified in the affected patients. Morphological analysis of spermatozoa revealed the MMAF phenotype in infertile patients. qPCR revealed a significant reduction in the level of sperm QRICH2 mRNA, and immunofluorescence staining revealed a lack of sperm QRICH2 expression. Additionally, patients harboring a homozygous QRICH2 mutation presented reduced expression of outer dense fiber 2 (ODF2) in sperm, whereas sperm expression of A-kinase anchor protein 4 (AKAP4) was normal. These findings expand our understanding of the genetic causes of MMAF-associated male infertility and emphasize the importance of genetic counseling.
    • Whole-exome sequencing in a Pakistani consanguineous family identified a new homozygous missense variant (c.4618C>T) in the QRICH2 gene, pinpointing it as a primary cause of MMAF-associated male infertility. This variant disrupts the function of QRICH2, which is crucial for sperm flagellar biogenesis, leading to abnormal sperm morphology.
    • Morphological analysis confirmed the MMAF phenotype in affected patients, characterized by bent, irregular, short, or absent sperm flagella.
    • Molecular investigations revealed reduced QRICH2 mRNA expression and the absence of the QRICH2 protein in sperm cells harboring the homozygous mutation. Furthermore, patients presented decreased levels of outer dense fiber 2 (ODF2), suggesting a broader impact on sperm function beyond flagellar development. These findings underscore the genetic underpinnings of MMAF-related infertility and underscore the need for genetic counseling in affected families.

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  • [1]
    Barratt C L R, Björndahl L, De Jonge C J, et al. The diagnosis of male infertility: an analysis of the evidence to support the development of global WHO guidance—challenges and future research opportunities. Human Reproduction Update, 2017, 23 (6): 660–680. doi: 10.1093/humupd/dmx021
    [2]
    Ma Y J, Wu B B, Chen Y H, et al. CCDC146 is required for sperm flagellum biogenesis and male fertility in mice. Cellular and Molecular Life Sciences, 2024, 81: 1. doi: 10.1007/s00018-023-05025-x
    [3]
    Long S H, Fu L L, Ma J, et al. Novel biallelic variants in DNAH1 cause multiple morphological abnormalities of sperm flagella with favorable outcomes of fertility after ICSI in Han Chinese males. Andrology, 2024, 12 (2): 349–364. doi: 10.1111/andr.13476
    [4]
    Zhang B B, Khan I, Liu C Y, et al. Novel loss-of-function variants in DNAH17 cause multiple morphological abnormalities of the sperm flagella in humans and mice. Clinical Genetics, 2021, 99 (1): 176–186. doi: 10.1111/cge.13866
    [5]
    Meng X M, Xu C, Li J W, et al. Multi-scale structures of the mammalian radial spoke and divergence of axonemal complexes in ependymal cilia. Nature Communications, 2024, 15: 362. doi: 10.1038/s41467-023-44577-1
    [6]
    Zhang G H, Li D Y, Tu C F, et al. Loss-of-function missense variant of AKAP4 induced male infertility through reduced interaction with QRICH2 during sperm flagella development. Human Molecular Genetics, 2022, 31 (2): 219–231. doi: 10.1093/hmg/ddab234
    [7]
    Visser L, Westerveld G H, Xie F, et al. A comprehensive gene mutation screen in men with asthenozoospermia. Fertility and Sterility, 2011, 95 (3): 1020–1024.e9. doi: 10.1016/j.fertnstert.2010.11.067
    [8]
    Wu B B, Yu X C, Liu C, et al. Essential role of CFAP53 in sperm flagellum biogenesis. Frontiers in Cell and Developmental Biology, 2021, 9: 676910. doi: 10.3389/fcell.2021.676910
    [9]
    Xu K B, Yang L L, Zhang L, et al. Lack of AKAP3 disrupts integrity of the subcellular structure and proteome of mouse sperm and causes male sterility. Development, 2020, 147 (2): dev181057. doi: 10.1242/dev.181057
    [10]
    Xu C, Tang D D, Shao Z M, et al. Homozygous SPAG6 variants can induce nonsyndromic asthenoteratozoospermia with severe MMAF. Reproductive Biology and Endocrinology, 2022, 20: 41. doi: 10.1186/s12958-022-00916-3
    [11]
    Xu Y J, Yang B Y, Lei C, et al. Novel compound heterozygous variants in CCDC40 associated with primary ciliary dyskinesia and multiple morphological abnormalities of the sperm flagella. Pharmacogenomics and Personalized Medicine, 2022, 15: 341–350. doi: 10.2147/PGPM.S359821
    [12]
    Yin Y Y, Mu W Y, Yu X C, et al. LRRC46 accumulates at the midpiece of sperm flagella and is essential for spermiogenesis and male fertility in mouse. International Journal of Molecular Sciences, 2022, 23 (15): 8525. doi: 10.3390/ijms23158525
    [13]
    Zhang J T, He X J, Wu H, et al. Loss of DRC1 function leads to multiple morphological abnormalities of the sperm flagella and male infertility in human and mouse. Human Molecular Genetics, 2021, 30 (21): 1996–2011. doi: 10.1093/hmg/ddab171
    [14]
    Zhang R D, Wu B B, Liu C, et al. CCDC38 is required for sperm flagellum biogenesis and male fertility in mice. Development, 2022, 149 (11): dev200516. doi: 10.1242/dev.200516
    [15]
    Ito C, Akutsu H, Yao R, et al. Odf2 haploinsufficiency causes a new type of decapitated and decaudated spermatozoa, Odf2-DDS, in mice. Scientific Reports, 2019, 9: 14249. doi: 10.1038/s41598-019-50516-2
    [16]
    Khelifa M B, Coutton C, Zouari R, et al. Mutations in DNAH1, which encodes an inner arm heavy chain dynein, lead to male infertility from multiple morphological abnormalities of the sperm flagella. The American Journal of Human Genetics, 2014, 94 (1): 95–104. doi: 10.1016/j.ajhg.2013.11.017
    [17]
    Chang T L, Tang H Y, Zhou X, et al. A novel homozygous nonsense variant of AK7 is associated with multiple morphological abnormalities of the sperm flagella. Reproductive Biomedicine Online, 2024, 48 (5): 103765. doi: 10.1016/j.rbmo.2023.103765
    [18]
    Gu L J, Liu X M, Yang J, et al. A new hemizygous missense mutation, c.454T>C (p.S152P), in AKAP4 gene is associated with asthenozoospermia. Molecular Reproduction and Development, 2021, 88 (9): 587–597. doi: 10.1002/mrd.23529
    [19]
    Liu C Y, Shen Y, Tang S Y, et al. Homozygous variants in AKAP3 induce asthenoteratozoospermia and male infertility. Journal of Medical Genetics, 2023, 60 (2): 137–143. doi: 10.1136/jmedgenet-2021-108271
    [20]
    Wang M, Yang Q Y, Zhou J P, et al. Novel compound heterozygous mutations in DNAH1 cause primary infertility in Han Chinese males with multiple morphological abnormalities of the sperm flagella. Asian Journal of Andrology, 2023, 25 (4): 512–519. doi: 10.4103/aja202292
    [21]
    Zhu Z J, Wang Y Z, Wang X B, et al. Novel mutation in ODF2 causes multiple morphological abnormalities of the sperm flagella in an infertile male. Asian Journal of Andrology, 2022, 24 (5): 463–472. doi: 10.4103/aja202183
    [22]
    Shen Y, Zhang F, Li F P, et al. Loss-of-function mutations in QRICH2 cause male infertility with multiple morphological abnormalities of the sperm flagella. Nature Communications, 2019, 10: 433. doi: 10.1038/s41467-018-08182-x
    [23]
    Kherraf Z E, Cazin C, Coutton C, et al. Whole exome sequencing of men with multiple morphological abnormalities of the sperm flagella reveals novel homozygous QRICH2 mutations. Clinical Genetics, 2019, 96 (5): 394–401. doi: 10.1111/cge.13604
    [24]
    Hiltpold M, Janett F, Mapel X M, et al. A 1-bp deletion in bovine QRICH2 causes low sperm count and immotile sperm with multiple morphological abnormalities. Genetics Selection Evolution, 2022, 54: 18. doi: 10.1186/s12711-022-00710-0
    [25]
    Ullah M A, Husseni A M, Mahmood S U. Consanguineous marriages and their detrimental outcomes in Pakistan: an urgent need for appropriate measures. International Journal of Community Medicine and Public Health, 2017, 5 (1): 1–3. doi: 10.18203/2394-6040.ijcmph20175757
    [26]
    Björndahl L, Brown J K. The sixth edition of the WHO Laboratory Manual for the Examination and Processing of Human Semen: ensuring quality and standardization in basic examination of human ejaculates. Fertility and Sterility, 2022, 117 (2): 246–251. doi: 10.1016/j.fertnstert.2021.12.012
    [27]
    Li H, Durbin R. Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics, 2009, 25 (14): 1754–1760. doi: 10.1093/bioinformatics/btp324
    [28]
    Wang K, Li M Y, Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Research, 2010, 38 (16): e164. doi: 10.1093/nar/gkq603
    [29]
    McKenna A, Hanna M, Banks E, et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research, 2010, 20 (9): 1297–1303. doi: 10.1101/gr.107524.110
    [30]
    Quinodoz M, Peter V G, Bedoni N, et al. AutoMap is a high performance homozygosity mapping tool using next-generation sequencing data. Nature Communications, 2021, 12: 518. doi: 10.1038/s41467-020-20584-4
    [31]
    Pedersen B S, Quinlan A R. Who’s who? Detecting and resolving sample anomalies in human DNA sequencing studies with peddy. The American Journal of Human Genetics, 2017, 100 (3): 406–413. doi: 10.1016/j.ajhg.2017.01.017
    [32]
    Zhang B B, Ma H, Khan T, et al. A DNAH17 missense variant causes flagella destabilization and asthenozoospermia. Journal of Experimental Medicine, 2020, 217 (2): e20182365. doi: 10.1084/jem.20182365
    [33]
    Ma A, Zeb A, Ali I, et al. Biallelic variants in CFAP61 cause multiple morphological abnormalities of the flagella and male infertility. Frontiers in Cell and Developmental Biology, 2022, 9: 803818. doi: 10.3389/fcell.2021.803818
  • 加载中

Catalog

    Figure  1.  MMAF patients from a Pakistani consanguineous family. (a) Pedigree chart of two infertile male patients, IV:1 and IV:3, from a consanguineous marriage. Squares denote males, while circles represent females. The solid squares denote the patients, and the hollow squares represent the unaffected individuals. The double horizontal lines indicate a consanguineous marriage. The Arabic numerals indicate the number of children born to a couple, whereas the Roman numerals indicate the generation number. The red arrows on the pedigree chart represent individuals analyzed via WES. (b) H&E staining showing the morphological defects of flagella in the spermatozoa of MMAF patients, including (i) short, (ii) bent, (iii) coiled, (iv) irregular caliber, and (v) absent. (c) Statistics of flagellar abnormalities in both the fertile controls and the patients (IV:1 & IV:3). Scale bars = 10 µm. WES: whole-exome sequencing.

    Figure  2.  Identification of a novel homozygous QRICH2 missense variant. (a) Sanger sequencing verification of the QRICH2 mutation, c.4618C>T, across available family members. The parents (III:1 & III:2) and the fertile brother (IV:2) were heterozygous, whereas the patients (IV:1 & IV:3) were homozygous for the identified mutation. Red arrows indicate the identified mutation. (b) QRICH2 structure and position of the identified mutation at the genomic, transcriptional, and protein levels. QRICH2 is located at chromosome 17 and consists of 19 exons encoding a protein of 1663 amino acids (NM_032134.2). The identified mutation is located in exon 15. Red arrows denote the mutation site at the gDNA, CDS, and protein levels. (c) Conservation of the affected amino acid (arginine) across different species is evident in the multiple sequence alignment. MUT: mutant allele; WT: wild-type allele; T: thymine; G: guanine; C: cytosine; A: adenine; QRICH2: glutamine-rich protein 2; UTR: untranslated region.

    Figure  3.  QRICH2 expression was absent in the patient’s spermatozoa. (a) The graph represents the QRICH2 mRNA expression level of patient IV:1 with a low level of QRICH2 compared with that of the fertile control. n = 3, Student’s t test; *P < 0.05. (b) Representative western blot images showing the presence of the QRICH2 band in the sperm lysate of the normal fertile control and the complete absence of the band in patient IV:1. A loading control (e.g., α-tubulin) was used to ensure equal protein loading. (c) Representative images of spermatozoa from normal fertile controls and patients (IV:1 & IV:3) costained with an anti-QRICH2 antibody (red), an anti-α-tubulin antibody (green), and Hoechst (blue, nuclear marker). The QRICH2 signals were absent in the spermatozoa of the patients (IV:1 & IV:3), whereas normal signals of QRICH2 were observed in the anterior sperm flagella of the normal fertile controls. Scale bars = 10 µm. QRICH2: Glutamine-rich protein 2. Statistical analysis revealed that the difference in QRICH2 expression between patients (IV:1) and normal fertile controls was significant (*P<0.05).

    Figure  4.  Patients with the QRICH2 mutation presented reduced ODF2 and normal AKAP4 expression in their spermatozoa. Western blot analysis revealed the presence of a weak band of ODF2 (a) and an intact band of AKAP4 (c) in the sperm lysate of patient IV:1. Spermatozoa from normal fertile controls and patients (IV:1 & IV:3) were costained with anti-ODF2 and anti-AKAP4 antibodies. Images (b) and (d) show the corresponding fluorescence microscopy images of spermatozoa stained with anti-ODF2 and anti-AKAP4 antibodies, an anti-α-tubulin antibody (green), and Hoechst (a nuclear marker). The signals of ODF2 were weak (b), whereas normal signals of AKAP4 were detected in the spermatozoa of the patients (IV:1 & IV:3) (d). Scale bars = 10 µm. QRICH2: Glutamine-rich protein 2. ODF2: Outer dense fiber of sperm tails 2. AKAP4: A-kinase anchoring protein 4.

    [1]
    Barratt C L R, Björndahl L, De Jonge C J, et al. The diagnosis of male infertility: an analysis of the evidence to support the development of global WHO guidance—challenges and future research opportunities. Human Reproduction Update, 2017, 23 (6): 660–680. doi: 10.1093/humupd/dmx021
    [2]
    Ma Y J, Wu B B, Chen Y H, et al. CCDC146 is required for sperm flagellum biogenesis and male fertility in mice. Cellular and Molecular Life Sciences, 2024, 81: 1. doi: 10.1007/s00018-023-05025-x
    [3]
    Long S H, Fu L L, Ma J, et al. Novel biallelic variants in DNAH1 cause multiple morphological abnormalities of sperm flagella with favorable outcomes of fertility after ICSI in Han Chinese males. Andrology, 2024, 12 (2): 349–364. doi: 10.1111/andr.13476
    [4]
    Zhang B B, Khan I, Liu C Y, et al. Novel loss-of-function variants in DNAH17 cause multiple morphological abnormalities of the sperm flagella in humans and mice. Clinical Genetics, 2021, 99 (1): 176–186. doi: 10.1111/cge.13866
    [5]
    Meng X M, Xu C, Li J W, et al. Multi-scale structures of the mammalian radial spoke and divergence of axonemal complexes in ependymal cilia. Nature Communications, 2024, 15: 362. doi: 10.1038/s41467-023-44577-1
    [6]
    Zhang G H, Li D Y, Tu C F, et al. Loss-of-function missense variant of AKAP4 induced male infertility through reduced interaction with QRICH2 during sperm flagella development. Human Molecular Genetics, 2022, 31 (2): 219–231. doi: 10.1093/hmg/ddab234
    [7]
    Visser L, Westerveld G H, Xie F, et al. A comprehensive gene mutation screen in men with asthenozoospermia. Fertility and Sterility, 2011, 95 (3): 1020–1024.e9. doi: 10.1016/j.fertnstert.2010.11.067
    [8]
    Wu B B, Yu X C, Liu C, et al. Essential role of CFAP53 in sperm flagellum biogenesis. Frontiers in Cell and Developmental Biology, 2021, 9: 676910. doi: 10.3389/fcell.2021.676910
    [9]
    Xu K B, Yang L L, Zhang L, et al. Lack of AKAP3 disrupts integrity of the subcellular structure and proteome of mouse sperm and causes male sterility. Development, 2020, 147 (2): dev181057. doi: 10.1242/dev.181057
    [10]
    Xu C, Tang D D, Shao Z M, et al. Homozygous SPAG6 variants can induce nonsyndromic asthenoteratozoospermia with severe MMAF. Reproductive Biology and Endocrinology, 2022, 20: 41. doi: 10.1186/s12958-022-00916-3
    [11]
    Xu Y J, Yang B Y, Lei C, et al. Novel compound heterozygous variants in CCDC40 associated with primary ciliary dyskinesia and multiple morphological abnormalities of the sperm flagella. Pharmacogenomics and Personalized Medicine, 2022, 15: 341–350. doi: 10.2147/PGPM.S359821
    [12]
    Yin Y Y, Mu W Y, Yu X C, et al. LRRC46 accumulates at the midpiece of sperm flagella and is essential for spermiogenesis and male fertility in mouse. International Journal of Molecular Sciences, 2022, 23 (15): 8525. doi: 10.3390/ijms23158525
    [13]
    Zhang J T, He X J, Wu H, et al. Loss of DRC1 function leads to multiple morphological abnormalities of the sperm flagella and male infertility in human and mouse. Human Molecular Genetics, 2021, 30 (21): 1996–2011. doi: 10.1093/hmg/ddab171
    [14]
    Zhang R D, Wu B B, Liu C, et al. CCDC38 is required for sperm flagellum biogenesis and male fertility in mice. Development, 2022, 149 (11): dev200516. doi: 10.1242/dev.200516
    [15]
    Ito C, Akutsu H, Yao R, et al. Odf2 haploinsufficiency causes a new type of decapitated and decaudated spermatozoa, Odf2-DDS, in mice. Scientific Reports, 2019, 9: 14249. doi: 10.1038/s41598-019-50516-2
    [16]
    Khelifa M B, Coutton C, Zouari R, et al. Mutations in DNAH1, which encodes an inner arm heavy chain dynein, lead to male infertility from multiple morphological abnormalities of the sperm flagella. The American Journal of Human Genetics, 2014, 94 (1): 95–104. doi: 10.1016/j.ajhg.2013.11.017
    [17]
    Chang T L, Tang H Y, Zhou X, et al. A novel homozygous nonsense variant of AK7 is associated with multiple morphological abnormalities of the sperm flagella. Reproductive Biomedicine Online, 2024, 48 (5): 103765. doi: 10.1016/j.rbmo.2023.103765
    [18]
    Gu L J, Liu X M, Yang J, et al. A new hemizygous missense mutation, c.454T>C (p.S152P), in AKAP4 gene is associated with asthenozoospermia. Molecular Reproduction and Development, 2021, 88 (9): 587–597. doi: 10.1002/mrd.23529
    [19]
    Liu C Y, Shen Y, Tang S Y, et al. Homozygous variants in AKAP3 induce asthenoteratozoospermia and male infertility. Journal of Medical Genetics, 2023, 60 (2): 137–143. doi: 10.1136/jmedgenet-2021-108271
    [20]
    Wang M, Yang Q Y, Zhou J P, et al. Novel compound heterozygous mutations in DNAH1 cause primary infertility in Han Chinese males with multiple morphological abnormalities of the sperm flagella. Asian Journal of Andrology, 2023, 25 (4): 512–519. doi: 10.4103/aja202292
    [21]
    Zhu Z J, Wang Y Z, Wang X B, et al. Novel mutation in ODF2 causes multiple morphological abnormalities of the sperm flagella in an infertile male. Asian Journal of Andrology, 2022, 24 (5): 463–472. doi: 10.4103/aja202183
    [22]
    Shen Y, Zhang F, Li F P, et al. Loss-of-function mutations in QRICH2 cause male infertility with multiple morphological abnormalities of the sperm flagella. Nature Communications, 2019, 10: 433. doi: 10.1038/s41467-018-08182-x
    [23]
    Kherraf Z E, Cazin C, Coutton C, et al. Whole exome sequencing of men with multiple morphological abnormalities of the sperm flagella reveals novel homozygous QRICH2 mutations. Clinical Genetics, 2019, 96 (5): 394–401. doi: 10.1111/cge.13604
    [24]
    Hiltpold M, Janett F, Mapel X M, et al. A 1-bp deletion in bovine QRICH2 causes low sperm count and immotile sperm with multiple morphological abnormalities. Genetics Selection Evolution, 2022, 54: 18. doi: 10.1186/s12711-022-00710-0
    [25]
    Ullah M A, Husseni A M, Mahmood S U. Consanguineous marriages and their detrimental outcomes in Pakistan: an urgent need for appropriate measures. International Journal of Community Medicine and Public Health, 2017, 5 (1): 1–3. doi: 10.18203/2394-6040.ijcmph20175757
    [26]
    Björndahl L, Brown J K. The sixth edition of the WHO Laboratory Manual for the Examination and Processing of Human Semen: ensuring quality and standardization in basic examination of human ejaculates. Fertility and Sterility, 2022, 117 (2): 246–251. doi: 10.1016/j.fertnstert.2021.12.012
    [27]
    Li H, Durbin R. Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics, 2009, 25 (14): 1754–1760. doi: 10.1093/bioinformatics/btp324
    [28]
    Wang K, Li M Y, Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Research, 2010, 38 (16): e164. doi: 10.1093/nar/gkq603
    [29]
    McKenna A, Hanna M, Banks E, et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research, 2010, 20 (9): 1297–1303. doi: 10.1101/gr.107524.110
    [30]
    Quinodoz M, Peter V G, Bedoni N, et al. AutoMap is a high performance homozygosity mapping tool using next-generation sequencing data. Nature Communications, 2021, 12: 518. doi: 10.1038/s41467-020-20584-4
    [31]
    Pedersen B S, Quinlan A R. Who’s who? Detecting and resolving sample anomalies in human DNA sequencing studies with peddy. The American Journal of Human Genetics, 2017, 100 (3): 406–413. doi: 10.1016/j.ajhg.2017.01.017
    [32]
    Zhang B B, Ma H, Khan T, et al. A DNAH17 missense variant causes flagella destabilization and asthenozoospermia. Journal of Experimental Medicine, 2020, 217 (2): e20182365. doi: 10.1084/jem.20182365
    [33]
    Ma A, Zeb A, Ali I, et al. Biallelic variants in CFAP61 cause multiple morphological abnormalities of the flagella and male infertility. Frontiers in Cell and Developmental Biology, 2022, 9: 803818. doi: 10.3389/fcell.2021.803818

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